CHBC Faculty Publications

Browse all authors | Browse all journals

Author: Moradi, Mahmoud

Filter by publication type
TitlePublication NamePub. TypeYear
An Investigation of the Conformational Dynamics of ABC Exporter PCAT1 using Microsecond-Level MD SimulationsBiophysical JournalAbstract2021Find It
An Investigation of the Disulfide Bridge Formation of a Thylakoid Protease using Nanosecond-Level MD SimulationsBiophysical JournalAbstract2021Find It
Comparing the Dynamic Differences between X-ray and Cryo-EM Structures of Cannabinoid Receptor 1 using Molecular Dynamics SimulationsBiophysical JournalAbstract2021Find It
Conformational Transition Pathway of GkPOTBiophysical JournalAbstract2021Find It
Developing Efficient Transfer Free Energy Calculation Methods for Hydrophobicity PredictionsBiophysical JournalAbstract2021Find It
Differential Dynamic Behavior of Prefusion Spike Glycoproteins of Sars Coronaviruses 1 and 2Biophysical JournalAbstract2021Find It
Integrating Molecular Dynamics and smFRET Data to Study the Conformational Ensemble of the C-Terminus of Albino3 ProteinBiophysical JournalAbstract2021Find It
Investigation of Cyclic AMP Binding Interactions with Isolated Cyclic Nucleotide Binding Domain of HCN1 Channel using Atomistic Molecular Dynamics Simulations at Microsecond TimescaleBiophysical JournalAbstract2021Find It
Molecular Dynamics Investigation of the Influenza Hemagglutinin Conformational ChangesBiophysical JournalAbstract2021Find It
An Integrative Approach to Single-Molecule FRET Spectroscopy and Molecular Dynamics Simulations for the Study of Intrinsically Disordered ProteinsBiophysical JournalAbstract2020Find It
An Investigation of the Influenza Hemagglutinin Membrane Fusion Process using Microsecond-Level MD SimulationsBiophysical JournalAbstract2020Find It
An Investigation of the YidC-Mediated Membrane Insertion of a Pf3 Coat Protein Using MD SimulationsBiophysical JournalAbstract2020Find It
Effect of Cholesterol on the Structural Dynamics of Metabotropic Glutamate Receptor (mGluR(1)): A Molecular Dynamics StudyBiophysical JournalAbstract2020Find It
Structural Propensity in the C-terminal Domain of the ALbino3 Translocase in ThylakoidsFASEB JournalJournal Article2020Find It
Lipid-Dependent Alternating Access Mechanism of a Bacterial Multidrug ABC ExporterACS Central ScienceJournal Article2019Find It
A Comprehensive Investigation of the Stabilization of Monomeric Hfgf1 by Heparin Hexasaccharide using Microsecond-Level MD Simulations and Enhanced Sampling TechniquesBiophysical JournalAbstract2019Find It
Binding Free Energy Calculations of NMDA Glutamate ReceptorsBiophysical JournalAbstract2019Find It
Elucidating the Molecular Basis of pH-Triggered Activation of an Engineered Mechanosensitive ChannelBiophysical JournalAbstract2019Find It
Overcoming the Embeddability Problem: A More Robust Calculation of Kinetic Information from Sparsely Sampled Molecular Dynamics SimulationsBiophysical JournalAbstract2019Find It
An Effective Electric Dipole Model for Voltage-induced Gating Mechanism of LyseninScientific ReportsJournal Article2019Find It
The Role of a Crystallographically Unresolved Cytoplasmic Loop in Stabilizing the Bacterial Membrane Insertase YidC2Scientific ReportsJournal Article2019Find It
High school biology students use of visual molecular dynamics as an authentic tool for learning about modeling as a professional scientific practiceBiochemistry and Molecular Biology EducationJournal Article2018Find It
Lipid-Dependent Alternating Access Mechanism in ABC Exporters Revealed using Microsecond-Level Molecular Dynamics SimulationsBiophysical JournalAbstract2018Find It
Microsecond-Level Simulations Reveal Membrane Protein Insertion Mechanism of Insertase YidCBiophysical JournalAbstract2018Find It
ALS-causing mutations in profilin-1 alter its conformational dynamics: A computational approach to explain propensity for aggregationScientific ReportsJournal Article2018Find It
Modeling the atomistic structure and dynamics of the chloroplast signal recognition particlesAbstracts of Papers, 254th ACS National Meeting and Exposition, Washington, DC, United States, August 20-24, 2017Abstract2017Find It
All-Atom Molecular Dynamics Simulation of Stealth LiposomesBiophysical JournalAbstract2017Find It
Couplings between Local and Global Conformational Changes in Proton-Coupled Oligopeptide TransportersBiophysical JournalAbstract2017Find It
What Can and Cannot Be Learned from Molecular Dynamics Simulations of Bacterial Proton-Coupled Oligopeptide Transporter GkPOT?Journal of Physical Chemistry BJournal Article2017Find It
Chemomechanical Coupling in Hexameric Protein-Protein Interfaces Harnesses Energy within V-Type ATPasesJournal of the American Chemical SocietyJournal Article2017Find It
Conformational free energy landscape of inward- and outward-facing states of peptidase-containing ATP-binding cassette transporter PCAT1Abstracts of Papers, 251st ACS National Meeting and Exposition, San Diego, CA, United States, March 13-17, 2016Abstract2016Find It
A Riemannian Framework for Tackling Large-Scale Conformational Changes of Proteins using All-ATOM Molecular Dynamics SimulationsBiophysical JournalAbstract2016Find It
Effective Riemannian Diffusion Model for Conformational Dynamics of Biomolecular SystemsJournal of Physical Chemistry LettersJournal Article2016Find It
Effective Riemannian diffusion model for conformational dynamics of membrane transportersAbstracts, 67th Southeast/71st Southwest Joint Regional Meeting of the American Chemical Society, Memphis, TN, United States, November 4-7Abstract2015Find It